Statistical Inference and Modeling for High-throughput Experiments

A focus on the techniques commonly used to perform statistical inference on high throughput data.

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Created by: Michael Love

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Course Description

In this course you'll learn various statistics topics including multiple testing problem, error rates, error rate controlling procedures, false discovery rates, q-values and exploratory data analysis. We then introduce statistical modeling and how it is applied to high-throughput data. In particular, we will discuss parametric distributions, including binomial, exponential, and gamma, and describe maximum likelihood estimation. We provide several examples of how these concepts are applied in next generation sequencing and microarray data. Finally, we will discuss hierarchical models and empirical bayes along with some examples of how these are used in practice. We provide R programming examples in a way that will help make the connection between concepts and implementation.
Given the diversity in educational background of our students we have divided the series into seven parts. You can take the entire series or individual courses that interest you. If you are a statistician you should consider skipping the first two or three courses, similarly, if you are biologists you should consider skipping some of the introductory biology lectures. Note that the statistics and programming aspects of the class ramp up in difficulty relatively quickly across the first three courses. By the third course will be teaching advanced statistical concepts such as hierarchical models and by the fourth advanced software engineering skills, such as parallel computing and reproducible research concepts.
These courses make up 2 XSeries and are self-paced:
PH525.1x: Statistics and R for the Life Sciences
PH525.2x: Introduction to Linear Models and Matrix Algebra
PH525.3x: Statistical Inference and Modeling for High-throughput Experiments
PH525.4x: High-Dimensional Data Analysis
PH525.5x: Introduction to Bioconductor: annotation and analysis of genomes and genomic assays
PH525.6x: High-performance computing for reproducible genomics
PH525.7x: Case studies in functional genomics
This class was supported in part by NIH grant R25GM114818.

Intermediate Level

Time: 4 Weeks - 2-3 hours per week

Instructor Details

Michael Love

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Michael Love is Assistant Professor in the Departments of Biostatistics and Genetics at UNC Gillings School of Global Public Health. Dr. Love received his bachelor's in mathematics in 2005 from Stanford University, his master's in statistics in 2010 from Stanford University, and his Ph.D. in Computational Biology in 2013 from the Freie Universitt Berlin. Dr. Love uses statistical models to infer biologically meaningful patterns from high-throughput sequencing data, and develops open-source statistical software for the Bioconductor Project.