Genomic Data Science with Galaxy

With genomics sparks a revolution in medical discoveries, it becomes imperative to be able to better understand the genome, and be able to leverage the data and information from genomic datasets. Genomic Data Science is the field that applies statistics and data science to the genome.This Specialization covers the concepts and tools to understand, analyze, and interpret data from next generation sequencing experiments. It teaches the most common tools used in genomic data science including how to use the command line, along with a variety of software implementation tools like Python, R, Biocon

Created by: James Taylor

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Overall Score : 60 / 100

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Course Description

Learn to use the tools that are available from the Galaxy Project. This is the second course in the Genomic Big Data Science Specialization.

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Instructor Details

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James Taylor is the Ralph S. O'Connor Associate Professor of logy and Associate Professor of Computer Science at Johns Hopkins University. Until 2014 he was an Associate Professor in the departments of logy and Mathematics & Computer Science at Emory University. He is one of the original developers of the Galaxy platform for data analysis, and his group continues to work on extending the Galaxy platform. His group also works on understanding genomic and epigenomic regulation of gene transcription through integrated analysis of functional genomic data. James received a PhD in Computer Science from Penn State University, where he was involved in several vertebrate genome projects and the ENCODE project.

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Reviews

3.0

144 total reviews

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By Chris C on 8-Sep-19

The lecturer only shortly explains what it is we are trying to analyze. He quickly skips over the biology and tells where to click in Galaxy. Additionally I can understand that frequently you would like to stick to the default values. Every now and then the lecturer changes some parameters without explaining well enough how and why to do so.The assignment at the end is tough. It is hard to accomplish with only the course material as background. One needs to look for other Galaxy tutorials to successfully complete the assignment.

By Deepa F P on 11-Aug-19

Dumbest course I ever seen......confused and very low level. The final exam is peer reviewed by two classmates and I didn't pass because one classmate is unable to open the vcf file

By SATISH R on 27-Mar-17

Very poor presentation and content. Difficult to navigate and all the links used including that for Galaxy are outdated. There was no effort made to provide a method to get through the course given all the changes since the videos were recorded. This course is the reason I have decided not to pursue the specialization it falls under.

By Brian N on 1-Aug-16

Course assignment requires knowledge that is not discussed in the course. Various inconsistencies throughout the course. Week 4's material is not really helpful and I had a feeling that the instructior just wanted to "wrap up" the course and didn't really care if the material is appropriate. Poorly written quizzes.

By Suman C on 12-Jul-16

First, the instructor assumes that the students know so much background knowledge when the students are expecting to learn these stuff in the course. I also feel that this course teaches students to memorize steps needed to accomplish certain operations in Galaxy without explaining why it occurs.

By Angel S on 25-Apr-17

Awful course. The lectures IN NO WAY prepare you for the final assignment which is supposed to take two hours. The "course" consists of really boring videos of the instructor using Galaxy and in no way teaches you anything about using Galaxy or how it works. The lectures and quizzes are a joke. You can pass the quizzes just by watching the videos. I got to the final assignment and had no clue what to do if you. I know nothing about bioinformatics, or NGS (which is why I took and paid for this stupid course) so I spent WEEKS on the final assignment and I STILL could not finish or pass the course. Whoever allows this course to still exist and waste people's time and take their money should be ASHAMED of themselves. Read the discussion forums and you'll see what I'm talking abut. DO NOT TAKE THIS COURSE.

By Karthik S N on 26-Oct-16

This course doesn't teach much beyond how to use Galaxy tools.

By Natalya K on 7-Aug-16

This class presents very elementary information in the video lectures, then it requires knowledge far beyond what is taught in the course to finish the final project.

By Jomo C on 26-Oct-16

I suggest to do this course ONLY if you're doing whole specialization.Course is simply bad, teacher doesn't give to much information and project is very hard to finish.

By Rorie D on 16-May-16

Course Project is way outside of what was taught in class.

By Debasish M on 21-Feb-16

It gives a quick background on Galaxy and its softwares. Content is appropriate but does not prepare you for even the final assignment or real genomic problems.

By Reginald D F on 27-May-16

This course's content is useful but honestly the final project is ridiculous because it is peer reviewed and the project is not very straightforward. Everyone gets different answers and without an answer key, no one knows what is right and wrong making it is almost impossible to pass. This needs to change.